SC2Spa
General
Installation
API
Gallery
Tutorials
Jupyter Notebooks
Map single cells to Space (Slide-seqV2 Mouse Hippocampus)
Data Preparation for Spatial Transcriptomics Analysis
Map snRNAseq to Visium (Cell2Location Adult Mouse Brain)
Download processed datasets and pretrained model
Load
Fine Mapping with SC2Spa
Visualize Cell Type Locations
Visualization of Cell Types in Spatial Transcriptomics
Visualizing Cell Types for Mouse 2
Visualization of All Cell Types for Mouse 2
Visualization of Four Cell Types Across Both Mice
Impute
Calculate Bivariate Moran’s I
Calculate location predict scores of genes
Pearson’s r
Visualize Top Correlated Genes Across Different Data Types
R Notebooks
Cell communication Analysis based on SC2Spa and SpaTalk
SC2Spa
Tutorials
View page source
Tutorials
Jupyter Notebooks
Map single cells to Space (Slide-seqV2 Mouse Hippocampus)
Map snRNAseq to Visium (Cell2Location Adult Mouse Brain)
R Notebooks
Cell communication Analysis based on SC2Spa and SpaTalk
