SC2Spa.me.calc_DEEI

SC2Spa.me.calc_DEEI(A, cutoff=0.05, p_coef=1, n_process=16)

Calculate Balanced Mutual Exclusivity and Directed exclusively express index

Parameters

A

Gene expression matrix (n_cell x n_gene)

cutoff

gene expression cutoff that determines if a gene is expressed

p_coef

penalty factor for the BME statistic

n_process

number of cores to be used

Returns

DEEI

Mutual exclusivity statistics